PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65462.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 180aa    MW: 19914.4 Da    PI: 8.9651
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65462.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1979133356
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  MLOC_65462.1  79 RKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 133
                   45589*************98**********************************9 PP
2HD-ZIP_I/II122.52.1e-3978169191
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   e+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+ +l + +++L +++++Lr+++
  MLOC_65462.1  78 ERKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDALRAAHAELLAGRDALLADNHHLRSQV 169
                   69*****************9999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1768137IPR009057Homeodomain-like
PROSITE profilePS5007117.73474135IPR001356Homeobox domain
SMARTSM003896.7E-1777139IPR001356Homeobox domain
PfamPF000464.6E-1779133IPR001356Homeobox domain
CDDcd000861.95E-1579136No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1981142IPR009057Homeodomain-like
PRINTSPR000311.4E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000311.4E-6115131IPR000047Helix-turn-helix motif
PfamPF021831.0E-9135169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDSGRLIFGS AAPSRAAGAG GGQMMLFGGS GSLLGGSPVV AGVEDGRRKR PFLTSPEEEL  60
QLDDEMYGYY GLDENAPERK RRLTAEQVRA LERSFEEEKR KLEPERKSEL ARRLGIAPRQ  120
VAVWFQNRRA RWKAKQLEQD FDALRAAHAE LLAGRDALLA DNHHLRSQVI NPATASSSPD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782ERKRRL
2127135RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568500.0AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169950.12e-98homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC15e-56HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A287RE181e-116A0A287RE18_HORVV; Uncharacterized protein
TrEMBLF2CYZ41e-116F2CYZ4_HORVV; Predicted protein
STRINGMLOC_65462.11e-126(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-30homeobox 1