PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65462.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 115aa    MW: 13338 Da    PI: 10.2164
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65462.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.7e-201468356
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  +++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  MLOC_65462.2 14 RKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 68
                  45589*************98**********************************9 PP
2HD-ZIP_I/II124.45.3e-4013104191
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   e+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+ +l + +++L +++++Lr+++
  MLOC_65462.2  13 ERKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDALRAAHAELLAGRDALLADNHHLRSQV 104
                   69*****************9999******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.734970IPR001356Homeobox domain
SuperFamilySSF466897.94E-181072IPR009057Homeodomain-like
SMARTSM003896.7E-171274IPR001356Homeobox domain
CDDcd000867.12E-141471No hitNo description
PfamPF000461.7E-171468IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-201677IPR009057Homeodomain-like
PRINTSPR000317.8E-74150IPR000047Helix-turn-helix motif
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
PRINTSPR000317.8E-75066IPR000047Helix-turn-helix motif
PfamPF021834.6E-1070104IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MYGYYGLDEN APERKRRLTA EQVRALERSF EEEKRKLEPE RKSELARRLG IAPRQVAVWF  60
QNRRARWKAK QLEQDFDALR AAHAELLAGR DALLADNHHL RSQVINPATA SSSPD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217ERKRRL
26270RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65462.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-175AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169950.17e-65homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC12e-51HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A446U8Z29e-69A0A446U8Z2_TRITD; Uncharacterized protein
STRINGMLOC_65462.12e-77(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-29homeobox 1