PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6548.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 155aa    MW: 16394.4 Da    PI: 8.5206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6548.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000144567123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C +C++ F+++  L  H++ H
  MLOC_6548.1 45 FACCYCPRKFRSSQALGGHQNAH 67
                 78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.02E-54471No hitNo description
PROSITE profilePS5015710.0554572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDMGRGMGMG MGMARGMGMD REEGLNLSLS LQRSPSSPPR FQAVFACCYC PRKFRSSQAL  60
GGHQNAHKVQ RNLARRGRDA TTALSLASAA EQGKAALDDD SAPLRPADHD AADAWGGGRV  120
HPPRRQLQGS GAASSSAASG NEELADEMID LNLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668266e-52BT066826.1 Zea mays full-length cDNA clone ZM_BFb0076P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581274.25e-44uncharacterized protein LOC100830698
TrEMBLA0A287IJB41e-105A0A287IJB4_HORVV; Uncharacterized protein
STRINGMLOC_6548.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-13zinc finger protein 2