PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65695.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 197aa    MW: 22871.3 Da    PI: 7.6967
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65695.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.1e-1879170490
          FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   + YA++ GF vr    kks+ +ge +++ +vC + g + ++k +         er +++++rt+C  ++ vk++ d+ w+vt+++ +HnH+l 
  MLOC_65695.1  79 KMYARQKGFGVRYCFRKKSEASGELIRASLVCHRAGLKINKKVDtpnpqpIALERWRNTTERTNCPTRMFVKRR-DNSWVVTEINDDHNHPLI 170
                   57***********************************999998878887767777899****************.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1779170IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDSYFVAAHD RDRETVGASR TVLHQSANTD QTLDASSNRT PNDDHANEDE GMPEVMSTPQ  60
QPTTMMRFDT LEDAEKHXKM YARQKGFGVR YCFRKKSEAS GELIRASLVC HRAGLKINKK  120
VDTPNPQPIA LERWRNTTER TNCPTRMFVK RRDNSWVVTE INDDHNHPLI KKWSLTGYLR  180
SHRHIPEEEE QFVKLLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65695.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239385.19e-37protein FAR1-RELATED SEQUENCE 5
TrEMBLM0Z2D21e-123M0Z2D2_HORVV; Uncharacterized protein
STRINGMLOC_65695.11e-147(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.23e-12FAR1-related sequence 4