PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65699.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 247aa    MW: 25790 Da    PI: 6.1184
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65699.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.21e-2596156158
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                   ldDg +WrKYGqK + g+++prsY+rCt++   gC ++k+v+r++ dp +++++Y g H++
  MLOC_65699.1  96 LDDGMSWRKYGQKGILGATYPRSYFRCTHRhtqGCAATKQVQRATADPLLFDVVYVGAHTC 156
                   58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-2783157IPR003657WRKY domain
SuperFamilySSF1182902.09E-2489157IPR003657WRKY domain
PROSITE profilePS5081121.27691154IPR003657WRKY domain
SMARTSM007741.9E-3596158IPR003657WRKY domain
PfamPF031066.9E-2597156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEDAAATLAT ELDGLLAMAR ELEARVDGDQ GAPGAARELC SALAASVDRA VRLAGRGRNA  60
GARAGVNGQL RSGRKAAAAK VRTQVRVASM QDLGPLDDGM SWRKYGQKGI LGATYPRSYF  120
RCTHRHTQGC AATKQVQRAT ADPLLFDVVY VGAHTCAGAA VLGGTEQQLP PPAAFGQEQQ  180
SPPAAAPEGV QLPAEPVTPF SFPSSPASSW CQLTGSYGYA APGGGLGVDM ELEGQLDELF  240
LHMSEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-2196156868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65699.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3622340.0AK362234.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2003J02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196720.11e-135probable WRKY transcription factor 53
TrEMBLM0Y4T71e-178M0Y4T7_HORVV; Uncharacterized protein
STRINGMLOC_65699.11e-179(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.28e-30WRKY family protein