PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65804.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 84aa    MW: 9097.57 Da    PI: 11.1942
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65804.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.45e-101147339
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                  +en   r  t +kR +g+ KKA EL +LC++ v  + 
  MLOC_65804.4 11 VENAPARARTHAKRAKGLQKKALELATLCGVPVGFVC 47
                  588889999**********************997765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-6156IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-16177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.535146IPR002100Transcription factor, MADS-box
CDDcd001203.14E-14247No hitNo description
PRINTSPR004045.5E-6323IPR002100Transcription factor, MADS-box
PfamPF003198.5E-101148IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MARRKVAMRL VENAPARART HAKRAKGLQK KALELATLCG VPVGFVCSGA GAGAPPLEWE  60
SEEGVLERYR RAVPPEARAG HTHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65804.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763981e-136AK376398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122M08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158116.11e-39uncharacterized protein LOC109743439
TrEMBLA0A287X6867e-49A0A287X686_HORVV; Uncharacterized protein
STRINGMLOC_66440.17e-40(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.43e-11AGAMOUS-like 42