PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65838.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 557aa    MW: 61638.8 Da    PI: 6.608
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65838.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.22.4e-1331875561373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l+elLl+cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++P++kf+++ 
  MLOC_65838.1 187 LKELLLACARAVEEKNMYAVDVMVPELRKMVSVSGTPLERLGAYMVEGLVARLASSGHSIYKALRCKEPK---SSDLLSYMHFLYEACPYFKFGYMS 280
                   5799*****************************************************************9...9*********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l  +g+rL+++A  ++vpfef+  va + e++e  
  MLOC_65838.1 281 ANGAIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPTVRITGIDDSVSAyaRGGGLDLVGRRLSHIAGLCKVPFEFRS-VAMAGEEVEEG 376
                   ****************************************************888899999************************.7999******* PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L v pgEalaVn+ l+lh+++de+vs++++rd++L+lvk+l+Pkv+++veqe+++n+++F +rf+e+l+yy+a+f+s++ +lpr+++er+++E+++
  MLOC_65838.1 377 HLGVVPGEALAVNFTLELHHIPDETVSTANHRDRILRLVKGLRPKVLTLVEQESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERVNMEQHC 473
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   l+re+vn++acegaer+erhe ++kW++rl++aGF+p pls+ ++++++ ll+ ++ d y++ e++g+l+lgWk+rpLv+ SaW
  MLOC_65838.1 474 LAREVVNLIACEGAERVERHEVFGKWKARLTMAGFRPSPLSSLVNATISKLLQSYS-DNYKLAERDGALYLGWKKRPLVVSSAW 556
                   ********************************************************.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.238161538IPR005202Transcription factor GRAS
PfamPF035148.4E-131187556IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MADTPTSRMI HPFSNMQRQN PKQFQFQYPD NPQHPCHPYQ PSPDTHVVPQ HHYSLKSHSS  60
DASYENHVAQ MKHTLVDSSA AAGCMRHDSP SSHSFTPPSI RSGSGSPSSH DDSHSDSTDG  120
SPVSASCVTV TTEDPNDLKQ KLKDLEAEML GPDAAEIVNS LESSVAKQLS LEPEKWAQMM  180
DFPRGNLKEL LLACARAVEE KNMYAVDVMV PELRKMVSVS GTPLERLGAY MVEGLVARLA  240
SSGHSIYKAL RCKEPKSSDL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF  300
HIAQGAQWIS LLQALAARPG GPPTVRITGI DDSVSAYARG GGLDLVGRRL SHIAGLCKVP  360
FEFRSVAMAG EEVEEGHLGV VPGEALAVNF TLELHHIPDE TVSTANHRDR ILRLVKGLRP  420
KVLTLVEQES NTNTAPFPQR FAETLDYYTA IFESIDLTLP RDDRERVNME QHCLAREVVN  480
LIACEGAERV ERHEVFGKWK ARLTMAGFRP SPLSSLVNAT ISKLLQSYSD NYKLAERDGA  540
LYLGWKKRPL VVSSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-651915578375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65838.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641790.0AK364179.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176499.10.0chitin-inducible gibberellin-responsive protein 2-like
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLF2DJW10.0F2DJW1_HORVV; Predicted protein
STRINGMLOC_65838.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]