PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65876.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 315aa    MW: 34384.9 Da    PI: 9.6314
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65876.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.91.3e-241366356
       G2-like  3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtlehvkSHLQkYRla 56
                  +++WtpeLH+rFv+aveqL G +kA+P++ilelm+ +  Lt+++++SHLQkYR++
  MLOC_65876.1 13 QVDWTPELHRRFVQAVEQL-GLDKAVPSRILELMGNEyRLTRHNIASHLQKYRSH 66
                  689****************.**************88747**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.412868IPR017930Myb domain
SuperFamilySSF466897.35E-161269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-241269IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-241366IPR006447Myb domain, plants
PfamPF002497.9E-91564IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAVGSADEMM ESQVDWTPEL HRRFVQAVEQ LGLDKAVPSR ILELMGNEYR LTRHNIASHL  60
QKYRSHRKHL MAREAEAASW THKRQMYAAA GGPRKDAPAG GGPWVVPTVG FPPPGTMPHP  120
HAAMAHHPGQ PPPFCRPLHV WGHPTGVDAP LPLPLSPPST MLPVWPRHLA PPPAWAHQPP  180
VDPVYWHQQY NAARKWGPQA VTQCVPPPMP PAAMMQRFAA PPMPGMMPHP MYRPIPPPPS  240
PVPQNNKVAG LQLQLDAHPS KESIDAAIGD VLVKPWLPLP LGLKPPSLDS VMSELHKQGI  300
PKVPPAATTN CDGAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65876.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535710.0AK353571.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187877.11e-177probable transcription factor GLK2
SwissprotQ5NAN51e-88GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLM0Y5G80.0M0Y5G8_HORVV; Uncharacterized protein
STRINGMLOC_65876.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-51GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]