PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65945.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 763aa    MW: 84309.1 Da    PI: 6.6793
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65945.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.25.5e-22177277198
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+ltpsd++++g +++ +++a+e+       ++ + +++++ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e
  MLOC_65945.1 177 FCKILTPSDTSTHGGFSVLRRHANEClppldmTMP-TPTQEIISKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLMAGDAFVYL--RSETGE 270
                   99****************************97434.44469*********************************************999..447777 PP

                   .EEEEE- CS
            B3  92 lvvkvfr 98 
                    +v+v+r
  MLOC_65945.1 271 QRVGVRR 277
                   8999997 PP
2Auxin_resp95.11.1e-31303384183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++t+s+F v+Y+Pr s+s+++v+v+k++ a k+ ++vGmRf+m+fe ed++ +++ Gt+vg  d++p +W++S+W+sLk
  MLOC_65945.1 303 ASHAIKTNSIFVVYYRPRLSQSQYIVSVNKYHLASKTGFTVGMRFRMNFEAEDVPVKKFFGTIVGDGDFSP-QWSGSEWKSLK 384
                   789********************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-36164306IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-35170292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.307177279IPR003340B3 DNA binding domain
PfamPF023625.7E-20177277IPR003340B3 DNA binding domain
SMARTSM010197.1E-18177279IPR003340B3 DNA binding domain
CDDcd100175.59E-17177277No hitNo description
PfamPF065071.4E-27303384IPR010525Auxin response factor
PfamPF023096.1E-7649696IPR033389AUX/IAA domain
PROSITE profilePS5174523.091659739IPR000270PB1 domain
SuperFamilySSF542779.81E-9660732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGRAQQQTLT QGEHHPVPRP DQLLPPPSLS PRPHSSFPPG EDRTAEPVHH QPTATRVAMA  60
QPGRGRDPEL FAELWRACAG PLVEVPQRGE RVFYFLQGHL EQLQEPTDSA LLAEQIKMFQ  120
VPYKILCKVV NVELKAETET DEVYAQITLQ PDADQSDLPL ILDPTLPETP RPVVHTFCKI  180
LTPSDTSTHG GFSVLRRHAN ECLPPLDMTM PTPTQEIISK DLHGSEWRFK HIYRGQPRRH  240
LLTTGWSTFV TSKKLMAGDA FVYLRSETGE QRVGVRRLVQ KQSTMPASVI SSQSMHLGVL  300
ASASHAIKTN SIFVVYYRPR LSQSQYIVSV NKYHLASKTG FTVGMRFRMN FEAEDVPVKK  360
FFGTIVGDGD FSPQWSGSEW KSLKVQWDDS VAICNGPERV SPWEIDSSDV SSPAISTLLQ  420
SSAKNKRPRE TNENMNLPSQ EPTQEFWLSG VTQQHERTYV GSSDPNRISG SGYHQILWPS  480
EHAGYGAMSS SSVCQTPLGL GDGWFKDFNT SSQGVSPTLS EITQKLNRVA SSEGRAPPPW  540
ATALCGGYRA EEPTSKLSCN ATLPLPSPLT EQVAPYLLKV AEKVKGPGMV RLFGVNLMEN  600
TNNAAAATAG NASVGAGETS ARITGSVEGS GQLSAFSKVT KVVNESPREI QSQQSSIGRN  660
RVKVQMHGNA VGRAVDLASL DGYERLTNEL EQMFEIKDIK QNFKVAFNDN EGDTMKVGDD  720
PWMEFCRMVR KIVIYPIEDD KNMDPHQTSV FAAAPDEDLK ANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-141544063353Auxin response factor 1
4ldw_A1e-141544063353Auxin response factor 1
4ldw_B1e-141544063353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65945.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752620.0AK375262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181787.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLF2EGI50.0F2EGI5_HORVV; Auxin response factor
STRINGMLOC_65945.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-157auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]