PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65945.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 646aa    MW: 71277.5 Da    PI: 6.7511
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65945.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.3e-2260160198
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+ltpsd++++g +++ +++a+e+       ++ + +++++ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e
  MLOC_65945.5  60 FCKILTPSDTSTHGGFSVLRRHANEClppldmTMP-TPTQEIISKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLMAGDAFVYL--RSETGE 153
                   99****************************97434.44469*********************************************999..447777 PP

                   .EEEEE- CS
            B3  92 lvvkvfr 98 
                    +v+v+r
  MLOC_65945.5 154 QRVGVRR 160
                   8999997 PP
2Auxin_resp95.58.4e-32186267183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++t+s+F v+Y+Pr s+s+++v+v+k++ a k+ ++vGmRf+m+fe ed++ +++ Gt+vg  d++p +W++S+W+sLk
  MLOC_65945.5 186 ASHAIKTNSIFVVYYRPRLSQSQYIVSVNKYHLASKTGFTVGMRFRMNFEAEDVPVKKFFGTIVGDGDFSP-QWSGSEWKSLK 267
                   789********************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-3647189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-3553175IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-1860162IPR003340B3 DNA binding domain
CDDcd100174.07E-1760160No hitNo description
PROSITE profilePS5086311.30760162IPR003340B3 DNA binding domain
PfamPF023624.5E-2060160IPR003340B3 DNA binding domain
PfamPF065071.1E-27186267IPR010525Auxin response factor
PfamPF023094.8E-7532579IPR033389AUX/IAA domain
PROSITE profilePS5174523.091542622IPR000270PB1 domain
SuperFamilySSF542777.85E-9543615No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MFQVPYKILC KVVNVELKAE TETDEVYAQI TLQPDADQSD LPLILDPTLP ETPRPVVHTF  60
CKILTPSDTS THGGFSVLRR HANECLPPLD MTMPTPTQEI ISKDLHGSEW RFKHIYRGQP  120
RRHLLTTGWS TFVTSKKLMA GDAFVYLRSE TGEQRVGVRR LVQKQSTMPA SVISSQSMHL  180
GVLASASHAI KTNSIFVVYY RPRLSQSQYI VSVNKYHLAS KTGFTVGMRF RMNFEAEDVP  240
VKKFFGTIVG DGDFSPQWSG SEWKSLKVQW DDSVAICNGP ERVSPWEIDS SDVSSPAIST  300
LLQSSAKNKR PRETNENMNL PSQEPTQEFW LSGVTQQHER TYVGSSDPNR ISGSGYHQIL  360
WPSEHAGYGA MSSSSVCQTP LGLGDGWFKD FNTSSQGVSP TLSEITQKLN RVASSEGRAP  420
PPWATALCGG YRAEEPTSKL SCNATLPLPS PLTEQVAPYL LKVAEKVKGP GMVRLFGVNL  480
MENTNNAAAA TAGNASVGAG ETSARITGSV EGSGQLSAFS KVTKVVNESP REIQSQQSSI  540
GRNRVKVQMH GNAVGRAVDL ASLDGYERLT NELEQMFEIK DIKQNFKVAF NDNEGDTMKV  600
GDDPWMEFCR MVRKIVIYPI EDDKNMDPHQ TSVFAAAPDE DLKANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-124228967353Auxin response factor 1
4ldw_A1e-124228967353Auxin response factor 1
4ldw_B1e-124228967353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65945.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752620.0AK375262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181787.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A287KNS00.0A0A287KNS0_HORVV; Auxin response factor
STRINGMLOC_65945.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-133auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]