PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65998.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 218aa    MW: 24817.5 Da    PI: 9.1834
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65998.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.6e-113970435
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekv 35
                  +k err+++NReAA++sR+RKka++++Le+  
  MLOC_65998.7 39 SKTERRLAQNREAAKKSRLRKKAYVQNLETSR 70
                  799*************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-736112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2893882IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-73882No hitNo description
SuperFamilySSF579591.85E-73983No hitNo description
PfamPF001701.0E-74075IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
PfamPF141445.5E-31121195IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MHTTFALTPY PCFFFFFFLA YFAQRKHGST RKDGKLVDSK TERRLAQNRE AAKKSRLRKK  60
AYVQNLETSR VRLQQMEQEL QRARSQGIFL GGCGAGGDMS PGAAMFDMEY ARWLDDDGKR  120
LAELRGGLQA HLADSNLGAV VEECMQHYDE LFQLKAELAR SDVFHLLTGA WATPAERCFF  180
WMGGFRPSEL LKVIATPYIL LSSSSHALHL HLHLHPHP
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65998.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3663980.0AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190193.11e-110transcription factor LG2-like isoform X4
SwissprotO490671e-107LG2_MAIZE; Transcription factor LG2
TrEMBLA0A287M0I31e-140A0A287M0I3_HORVV; Uncharacterized protein
STRINGMLOC_65998.31e-118(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.23e-78bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]