PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66027.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 150aa    MW: 16484.4 Da    PI: 6.9345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66027.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000283858323
                  ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                  C +C++ F+++  L  H++ H
  MLOC_66027.1 38 CVYCDRKFRSSQALGGHQNAH 58
                  ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-102879No hitNo description
PROSITE profilePS5015711.0323663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803860IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEQLNSWEQD ENELNLELTL RMTWAAEAEE ELGGFFLCVY CDRKFRSSQA LGGHQNAHKH  60
ERSVAKRRRE IAASTRAHGA GAPPAAAQEQ DARPCGYAGD SDFTSAKARR TEPQKAAAPM  120
LAGMARKRAK GPSEYGYGAV DEGMDLSLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130ARKRAKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753400.0AK375340.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150431.17e-69uncharacterized protein LOC109735630
RefseqXP_020191320.17e-69uncharacterized protein LOC109777076
TrEMBLF2EGR31e-106F2EGR3_HORVV; Predicted protein
STRINGMLOC_66027.11e-107(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-14C2H2 family protein