PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_66152.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

ARF

Protein Properties

Length: 450aa MW: 50158 Da PI: 7.4034

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_66152.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.9	2.2e-24	135	236	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F ++++ MLOC_66152.3 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNDNN 227 99***************************86555544..8********************************************..77777 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l+++++r+ MLOC_66152.3 228 QLLLGIRRA 236 78*9997 PP
2	Auxin_resp	122.1	4.2e-40	261	344	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k MLOC_66152.3 261 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 344 79*******************************9789****************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.83E-48	120	264	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-42	127	250	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.82E-21	134	235	No hit	No description
SMART	SM01019	1.2E-24	135	237	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-22	135	236	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.971	135	237	IPR003340	B3 DNA binding domain
Pfam	PF06507	5.3E-35	261	344	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MNLSPSAGGG CLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ 60 VSVSTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL 120 PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL 180 HGNEWKFRHI FRGQPKRHLL TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ 240 TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI 300 SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS 360 LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGGKEDDL TSSLMWLRDG ANPGFQSFNF 420 GGLGMSPWMQ PRMDNSLLGM QPDMYQAISA

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MNLSPSAGGG CLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ  60
VSVSTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL  120
PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL  180
HGNEWKFRHI FRGQPKRHLL TTGWSVFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ  240
TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI  300
SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS  360
LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGGKEDDL TSSLMWLRDG ANPGFQSFNF  420
GGLGMSPWMQ PRMDNSLLGM QPDMYQAISA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-168	28	370	51	393	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_66152.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199461.1	0.0	auxin response factor 6-like
Swissprot	A2X1A1	0.0	ARFF_ORYSI; Auxin response factor 6
Swissprot	Q6H6V4	0.0	ARFF_ORYSJ; Auxin response factor 6
TrEMBL	A0A287TNI7	0.0	A0A287TNI7_HORVV; Auxin response factor
STRING	MLOC_66152.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	0.0	auxin response factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]