PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66152.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 352aa    MW: 39868.3 Da    PI: 10.2963
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66152.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-162613899
                  EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   ++++ +l+++++r+
  MLOC_66152.4  2 AKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNDNNQLLLGIRRA 61
                  589*******************************************..7777778***9997 PP
2Auxin_resp122.72.7e-4086169183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  MLOC_66152.4  86 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 169
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.675162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-23275IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-14261IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-21289IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-12360No hitNo description
PfamPF065073.5E-3586169IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFISAKRLVA GDSVLFIWND NNQLLLGIRR  60
ANRSQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLAKYVKAV  120
YHTRISVGMR FRMLFETEES SVRRYMGTIT GISDLDPARW PNSHWRSVKV GWDESTAGER  180
QPRVSLWEIE PLTTYPMYSS PFPMRLKRPW PTGLPSLYGT SGKEDDLTSS LMWLRDGANP  240
GFQSFNFGGL GMSPWMQPRM DNSLLGMQPD MYQAISAASF QNTAKQVSPA LLQFQQPQNI  300
AGRSALLSSQ ILQQVQPQFQ EMHHQNINGS AIQGHNQSEY LQQQLQRCQS FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-861195199393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66152.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A287TNH20.0A0A287TNH2_HORVV; Auxin response factor
STRINGTRIUR3_28948-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.11e-164auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]