PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66260.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 205aa    MW: 22319.1 Da    PI: 9.0809
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66260.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.61.9e-7191786170
         YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                    +eqvCyv+CnfCnt+lavsvP +s+f+vvtvrCGhCt+llsv+l+ +++  l+a  + +es   +    +++ +++   n+ +  s+sts s+++l
  MLOC_66260.1   9 PAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSpLPAAAQAQESSLGKPSGINGFIRDHSVYNHPEFGSSSTSSSKFQL 105
                   689******************************************9887543888888888776664444444444444444333333333333333 PP

         YABBY 102 ...senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        ++++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  MLOC_66260.1 106 ptmMFSSQNDLLHEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 178
                   2224455555555544479****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.9E-739178IPR006780YABBY protein
SuperFamilySSF470953.01E-8123172IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.0E-5125172IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSSGQIAPA EQVCYVHCNF CNTVLAVSVP GNSMFNVVTV RCGHCTNLLS VSLRGQVHSP  60
LPAAAQAQES SLGKPSGING FIRDHSVYNH PEFGSSSTSS SKFQLPTMMF SSQNDLLHEQ  120
TLHARPPEKR QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNWAH YPNIHFGLNP  180
GSDGGKRLAV DDAAPAAKKI QGFCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501120.0AK250112.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66k10, mRNA sequence.
GenBankAK3769820.0AK376982.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144O03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201583.11e-134protein YABBY 6-like
SwissprotQ2QM176e-93YAB6_ORYSJ; Protein YABBY 6
TrEMBLF2ELF41e-152F2ELF4_HORVV; Predicted protein
STRINGMLOC_66260.11e-152(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-58YABBY family protein