PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66260.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 172aa    MW: 18923.3 Da    PI: 10.1132
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66260.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY174.75.9e-54114531170
         YABBY  31 lfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenlksnvekeesastsvssekl...senedeevprvpp.virPPekr 122
                   +f+vvtvrCGhCt+llsv+l+ +++  l+a  + +es   +    +++ +++   n+ +  s+sts s+++l     ++++++ + +    rPPekr
  MLOC_66260.2   1 MFNVVTVRCGHCTNLLSVSLRGQVHSpLPAAAQAQESSLGKPSGINGFIRDHSVYNHPEFGSSSTSSSKFQLptmMFSSQNDLLHEQTlHARPPEKR 97 
                   69******************98875438888888887766644444444444444443333333333333332224455555555544479****** PP

         YABBY 123 qrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   qrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  MLOC_66260.2  98 QRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 145
                   **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-541145IPR006780YABBY protein
SuperFamilySSF470952.09E-890139IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.2E-592139IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MFNVVTVRCG HCTNLLSVSL RGQVHSPLPA AAQAQESSLG KPSGINGFIR DHSVYNHPEF  60
GSSSTSSSKF QLPTMMFSSQ NDLLHEQTLH ARPPEKRQRV PSAYNRFIKE EIRRIKANNP  120
DISHREAFST AAKNWAHYPN IHFGLNPGSD GGKRLAVDDA APAAKKIQGF CS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66260.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501120.0AK250112.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66k10, mRNA sequence.
GenBankAK3769820.0AK376982.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144O03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201583.11e-108protein YABBY 6-like
SwissprotQ2QM172e-69YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A287Q9Q01e-125A0A287Q9Q0_HORVV; Uncharacterized protein
TrEMBLF2ELF41e-125F2ELF4_HORVV; Predicted protein
TrEMBLM0Y6S31e-126M0Y6S3_HORVV; Uncharacterized protein
STRINGMLOC_66260.11e-126(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-45YABBY family protein