PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66260.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 179aa    MW: 19701.2 Da    PI: 9.4259
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66260.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2022.4e-6291686160
         YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                    +eqvCyv+CnfCnt+lavsvP +s+f+vvtvrCGhCt+llsv+l+ +++  l+a  + +es   +    +++ +++   n+ +  s+sts s+++l
  MLOC_66260.3   9 PAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSpLPAAAQAQESSLGKPSGINGFIRDHSVYNHPEFGSSSTSSSKFQL 105
                   689******************************************9887543888888888776664444444444444444333333333333333 PP

         YABBY 102 ...senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                        ++++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aakn 
  MLOC_66260.3 106 ptmMFSSQNDLLHEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNV 168
                   2224455555555544479******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.6E-649168IPR006780YABBY protein
SuperFamilySSF470952.36E-6123165IPR009071High mobility group box domain
CDDcd000842.02E-4132159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSSSGQIAPA EQVCYVHCNF CNTVLAVSVP GNSMFNVVTV RCGHCTNLLS VSLRGQVHSP  60
LPAAAQAQES SLGKPSGING FIRDHSVYNH PEFGSSSTSS SKFQLPTMMF SSQNDLLHEQ  120
TLHARPPEKR QRVPSAYNRF IKEEIRRIKA NNPDISHREA FSTAAKNVRR SIHACIHSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66260.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501120.0AK250112.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66k10, mRNA sequence.
GenBankAK3769820.0AK376982.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144O03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201583.11e-103protein YABBY 6-like
SwissprotQ2QM177e-72YAB6_ORYSJ; Protein YABBY 6
TrEMBLM0Y6S41e-129M0Y6S4_HORVV; Uncharacterized protein
STRINGMLOC_66260.11e-120(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-48YABBY family protein