PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66260.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 152aa    MW: 16571.7 Da    PI: 8.7152
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66260.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY94.52.5e-2991056101
         YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee.......lleelkveeenlksnvekeesast 94 
                    +eqvCyv+CnfCnt+lavsvP +s+f+vvtvrCGhCt+llsv+l+ +++  l+a  + +es   +       +       +++   n+ +  s+st
  MLOC_66260.4   9 PAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSpLPAAAQAQESSLGKpsgingfI-------RDHSVYNHPEFGSSST 98 
                   689******************************************98875438888887777666534433332.......3333333333333333 PP

         YABBY  95 svssekl 101
                   s s+++l
  MLOC_66260.4  99 SSSKFQL 105
                   3333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-309133IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSSSGQIAPA EQVCYVHCNF CNTVLAVSVP GNSMFNVVTV RCGHCTNLLS VSLRGQVHSP  60
LPAAAQAQES SLGKPSGING FIRDHSVYNH PEFGSSSTSS SKFQLPTMMF SSQNDLLHEQ  120
TLHARRKCHR ARNCSFISLH PSRYRSPSHD LG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66260.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501120.0AK250112.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66k10, mRNA sequence.
GenBankAK3769820.0AK376982.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144O03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201583.15e-70protein YABBY 6-like
SwissprotQ2QM172e-38YAB6_ORYSJ; Protein YABBY 6
TrEMBLM0Y6S51e-107M0Y6S5_HORVV; Uncharacterized protein
STRINGMLOC_66260.16e-82(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-19YABBY family protein