PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_66260.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

YABBY

Protein Properties

Length: 70aa MW: 7357.48 Da PI: 8.2286

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_66260.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	90.7	3.6e-28	8	64	5	60
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laae 60 +eqvCyv+CnfCnt+lavsvP +s+f+vvtvrCGhCt+llsv+l+ +++ l+a MLOC_66260.5 8 APAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSpLPAA 64 5689******************************************98876425554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.0E-27	9	66	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MSSSGQIAPA EQVCYVHCNF CNTVLAVSVP GNSMFNVVTV RCGHCTNLLS VSLRGQVHSP 60 LPAAAQAQVR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_66260.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250112	1e-111	AK250112.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66k10, mRNA sequence.
GenBank	AK376982	1e-111	AK376982.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144O03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168301.1	3e-39	protein YABBY 6-like, partial
Refseq	XP_020201583.1	1e-38	protein YABBY 6-like
Swissprot	Q2QM17	3e-30	YAB6_ORYSJ; Protein YABBY 6
TrEMBL	M0Y6S6	6e-43	M0Y6S6_HORVV; Uncharacterized protein
STRING	MLOC_66260.1	1e-41	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-20	YABBY family protein