PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66350.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 252aa    MW: 28292.5 Da    PI: 5.6585
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66350.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-1868121456
                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++ft+eq++ Le+ F+    ++  +e+++LA++lgL+ rqV +WFqN+Ra+++
  MLOC_66350.2  68 KRRFTEEQVRSLESTFHArRAKLEPREKADLARELGLQPRQVAIWFQNKRARWR 121
                   458**************8899********************************9 PP
2HD-ZIP_I/II119.81.4e-3866159193
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   e+krr+++eqv++LE++F++++ kLep++K++lareLglqprqva+WFqn+RAR++tkqlE+d++ L+++ydal+++ ++L++e+ +L+++l+e
  MLOC_66350.2  66 ERKRRFTEEQVRSLESTFHARRaKLEPREKADLARELGLQPRQVAIWFQNKRARWRTKQLEQDFAELRAHYDALHARVQSLKQEKLTLAAQLEE 159
                   69*****************9999*******************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-1754125IPR009057Homeodomain-like
PROSITE profilePS5007117.03862123IPR001356Homeobox domain
SMARTSM003891.3E-1665127IPR001356Homeobox domain
CDDcd000869.66E-1667124No hitNo description
Gene3DG3DSA:1.10.10.605.8E-1868129IPR009057Homeodomain-like
PfamPF000461.7E-1568121IPR001356Homeobox domain
PRINTSPR000312.0E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000312.0E-6103119IPR000047Helix-turn-helix motif
PfamPF021836.6E-12123164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSQVHALAIA CSSGVLSVTI RSRSRDGSEM ESDCQFLLPP PPRMYAAAGD DGQFLQQQQL  60
SGGGGERKRR FTEEQVRSLE STFHARRAKL EPREKADLAR ELGLQPRQVA IWFQNKRARW  120
RTKQLEQDFA ELRAHYDALH ARVQSLKQEK LTLAAQLEEL KKKLNERHDQ SASCGGSCAV  180
ADVDDKRNSF TSCAVEKDES AAPAGDVSDG STPGWYEYDD HLAYAVDLHE PFCATPELWE  240
TSWPLVEWNS VA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66350.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674560.0AK367456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152926.11e-148homeobox-leucine zipper protein HOX24-like
RefseqXP_020173935.11e-148homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U16e-86HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A287UDM50.0A0A287UDM5_HORVV; Uncharacterized protein
STRINGMLOC_66350.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.24e-28homeobox 7