PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66385.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 97aa    MW: 10946.7 Da    PI: 10.8087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66385.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-124370330
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
           HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                  ++h+e+ErrRR+riNs +++Lr+llP+ 
  MLOC_66385.2 43 KSHSEAERRRRERINSHLARLRSLLPNT 70
                  79************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5184097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-94370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-84370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-84372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MGHHGSPVHG MMMPPPFGAS PFGDFGRMTA QEIMDAKALA ASKSHSEAER RRRERINSHL  60
ARLRSLLPNT TKVLALWLHN SVPWHINSCM QCKYLQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66385.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3771631e-117AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189500.14e-44transcription factor bHLH30-like
SwissprotQ9S7Y18e-18BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A287PAL23e-64A0A287PAL2_HORVV; Uncharacterized protein
STRINGMLOC_66385.16e-47(Hordeum vulgare)
STRINGTraes_4DL_7BD3165FB.13e-47(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-14bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]