PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66537.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 120aa    MW: 13607.4 Da    PI: 7.7688
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66537.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.23e-1033796128
           NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MLOC_66537.2   3 DGRHKGCKKILVLYinFGKTRKAEKTNWVMHQYHL 37 
                   56789*********766899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.068156IPR003441NAC domain
SuperFamilySSF1019411.7E-11356IPR003441NAC domain
PfamPF023652.4E-4837IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVDGRHKGCK KILVLYINFG KTRKAEKTNW VMHQYHLGDL EDEKEGELIV SKVFYQTQPR  60
QSAAATTSTL LHEPSTAAAV QMLRQQHQML KQGDEMNKGN EGQDQQQQKF DHSPAGLEGL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66537.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644301e-92FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b.
GenBankHG6703061e-92HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156234.16e-63NAC domain-containing protein 73-like
RefseqXP_020156242.16e-63NAC domain-containing protein 73-like
SwissprotQ9M0F81e-30NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A287LZT74e-84A0A287LZT7_HORVV; Uncharacterized protein
STRINGMLOC_66537.16e-83(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-25NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]