PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66580.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 240aa    MW: 25497.6 Da    PI: 5.066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66580.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-193989155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++aa+++l+g
  MLOC_66580.1 39 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALDAARAYDAAARALYG 89
                  679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-3240103IPR001471AP2/ERF domain
PROSITE profilePS5103220.6534097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-294197IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-204198IPR016177DNA-binding domain
CDDcd000186.63E-164172No hitNo description
PfamPF008474.0E-124189IPR001471AP2/ERF domain
PRINTSPR003672.4E-94152IPR001471AP2/ERF domain
PRINTSPR003672.4E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MESMEPEVVA GMKQKKCCPL RRSRKGCMKG KGGPDNQQCP FRGVRQRTWG KWVAEIREPN  60
RGARLWLGTF ATALDAARAY DAAARALYGD CARLNLSASP SQVQVQVQVQ LPPAQGSGAN  120
GNSPPGTPCC SSNNSNSNSS ASTPTGTPTD VDCSNWMQPS YCYGTAEAPE DFEAYVTRLP  180
KAEDFGLEGF QEVPLEVLAE AGGGVSIWDL SIGPDMMAAA ADSSAAACTV PQQRLQQPTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-144196359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9520587e-99EU952058.1 Zea mays clone 1066007 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188398.11e-121dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA14e-84DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A287FXK11e-176A0A287FXK1_HORVV; Uncharacterized protein
STRINGMLOC_66580.11e-177(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-30ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]