PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66686.13
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 278aa    MW: 30334.5 Da    PI: 6.5189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66686.13genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.9e-1876125255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa+a++ a+++++g
  MLOC_66686.13  76 AYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGSFPTAVEAARAYDDAARAMYG 125
                    59****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1175125IPR001471AP2/ERF domain
PROSITE profilePS5103222.11576133IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2176134IPR016177DNA-binding domain
SMARTSM003804.7E-3676139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3177134IPR001471AP2/ERF domain
PRINTSPR003671.5E-97788IPR001471AP2/ERF domain
CDDcd000184.22E-2077135No hitNo description
PRINTSPR003671.5E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
METGGSKREG DCPGQERTKK VRRRTTGPDS VAETIKKWKE QNQKLQQENG SRKAPAKGSK  60
KGCMAGKGGP ENSNCAYRGV RQRTWGKWVA EIREPNRGNR LWLGSFPTAV EAARAYDDAA  120
RAMYGATARV NFPEHSPDAN SGCTMAPSLL TSNGATAVSH PSDGKDESES PPSLVSNAPT  180
AALHRSDAKD EFESAGTVAH KVKTEVSNDL GSTHEEHKAL EVFQPKGKAL HKEANVSYDY  240
FNVEEVVDMI IVELSADVKM EAHEEYQEGD DGFSLFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16771431581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66686.13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763440.0AK376344.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3121G09.
GenBankDQ0129410.0DQ012941.1 Hordeum vulgare subsp. vulgare dehydration responsive element binding protein 1 (DREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314715.11e-165dehydration-responsive element-binding protein 2A isoform X4
SwissprotA2WL191e-139DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLQ4ZGK00.0Q4ZGK0_HORVV; AP2/EREBP-like protein
STRINGTraes_3AS_62742A0471.11e-170(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-36ERF family protein