PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66686.14
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 264aa    MW: 28904 Da    PI: 6.9576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66686.14genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-1862111255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa+a++ a+++++g
  MLOC_66686.14  62 AYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGSFPTAVEAARAYDDAARAMYG 111
                    59****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1161111IPR001471AP2/ERF domain
PROSITE profilePS5103222.11562119IPR001471AP2/ERF domain
SMARTSM003804.7E-3662125IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2162120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-3163120IPR001471AP2/ERF domain
PRINTSPR003671.3E-96374IPR001471AP2/ERF domain
CDDcd000183.36E-2063121No hitNo description
PRINTSPR003671.3E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTRTKKVRRR TTGPDSVAET IKKWKEQNQK LQQENGSRKA PAKGSKKGCM AGKGGPENSN  60
CAYRGVRQRT WGKWVAEIRE PNRGNRLWLG SFPTAVEAAR AYDDAARAMY GATARVNFPE  120
HSPDANSGCT MAPSLLTSNG ATAVSHPSDG KDESESPPSL VSNAPTAALH RSDAKDEFES  180
AGTVAHKVKT EVSNDLGSTH EEHKALEVFQ PKGKALHKEA NVSYDYFNVE EVVDMIIVEL  240
SADVKMEAHE EYQEGDDGFS LFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16631291581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66686.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6473590.0HQ647359.1 Hordeum vulgare subsp. vulgare cultivar Morex AP2/EREBP-like protein gene, complete cds.
GenBankHQ6473600.0HQ647360.1 Hordeum vulgare subsp. vulgare cultivar Steptoe AP2/EREBP-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314715.11e-161dehydration-responsive element-binding protein 2A isoform X4
SwissprotA2WL191e-135DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLQ4ZGK00.0Q4ZGK0_HORVV; AP2/EREBP-like protein
STRINGTraes_3AS_62742A0471.11e-172(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-35ERF family protein