PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_6669.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WOX

Protein Properties

Length: 261aa MW: 28211.6 Da PI: 7.0153

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_6669.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.1	4.1e-15	29	89	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ l + +++V++WFqNrR + ++ MLOC_6669.1 29 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRLLLerfgAVRDANVFYWFQNRRSRSRR 89 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.4	7.7e-34	28	90	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+ Le++G+++d+NVfyWFQNr++R+r++ MLOC_6669.1 28 TRSRWAPKPEQILILESIFNSGMVNPAKDETARIRLLLERFGAVRDANVFYWFQNRRSRSRRR 90 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-13	22	95	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-8	24	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.224	25	90	IPR001356	Homeobox domain
SMART	SM00389	6.3E-5	27	94	IPR001356	Homeobox domain
Pfam	PF00046	7.3E-13	29	89	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEQHHHGQAP TPTHRGGRSS EGGEPTTTRS RWAPKPEQIL ILESIFNSGM VNPAKDETAR 60 IRLLLERFGA VRDANVFYWF QNRRSRSRRR ARQLQQSCGG TGDADQLPSN AVLAGHGYHG 120 IGTSPYNAMQ YGQLCGGVPA AAVTAAPHFL VDDADSGDDL FAIPRQMGLM ARGGESQHSY 180 TATDASQLSY QATVPGTTMP VFINGTVYDV PSTGALDVAG TFGSDVILVH SSGEILPVNE 240 RGVLMKSLQM GECYYLVFRS I

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_6669.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365174	0.0	AK365174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2031K13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200216.1	1e-160	WUSCHEL-related homeobox 10-like
Swissprot	Q6Z3L4	4e-90	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	M0Y8G7	0.0	M0Y8G7_HORVV; Uncharacterized protein
STRING	MLOC_6669.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	2e-29	WUSCHEL related homeobox 11

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]