PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66788.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 260aa    MW: 29704.9 Da    PI: 6.7956
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66788.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.7e-082102432154
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   k +yp+++++++L +++gL+ +q+ +WF N+R +
  MLOC_66788.2 210 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 243
                   579*****************************87 PP
2ELK284.9e-10164185122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK +L++++++++g++++E++
  MLOC_66788.2 164 ELKIELKQGFKSRIGDVREEIL 185
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-9239IPR005540KNOX1
PfamPF037903.3E-12237IPR005540KNOX1
SMARTSM012561.4E-2450105IPR005541KNOX2
PfamPF037916.5E-1953104IPR005541KNOX2
PROSITE profilePS512139.289164184IPR005539ELK domain
SMARTSM011880.0049164185IPR005539ELK domain
PfamPF037891.7E-6164185IPR005539ELK domain
PROSITE profilePS5007111.71184247IPR001356Homeobox domain
SMARTSM003894.2E-10186251IPR001356Homeobox domain
SuperFamilySSF466892.65E-16186250IPR009057Homeodomain-like
CDDcd000861.06E-11187248No hitNo description
Gene3DG3DSA:1.10.10.606.8E-25191250IPR009057Homeodomain-like
PfamPF059206.2E-18204243IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAVHPLCEQL VAAHVGCLRV ATPIDHLPLI DAQLAQSNGL LHSYAAHHRP FLSPHDKQEL  60
DSFLAQYLML LCSFREQLQQ HVRVHAVEAV MACREIEQSL QDLTGASLEE GTGATMSEDE  120
DEGPLMIMEA APLDMSSNGH DMMGFGPLVP TDTERSLMER VRQELKIELK QGFKSRIGDV  180
REEILRKRRA GKLPGDTTTI LKQWWQEHAK WPYPTEDDKA KLVEETGLQL KQINNWFINQ  240
RKRNWHNNSQ TSTLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240259RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66788.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695360.0AK369536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2093A15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184577.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW31e-180KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLF2E0650.0F2E065_HORVV; Predicted protein
STRINGMLOC_66788.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-144KNOTTED-like homeobox of Arabidopsis thaliana 7