PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67028.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 137aa    MW: 14882 Da    PI: 10.145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67028.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002394116123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg  F     L  H+r+H
  MLOC_67028.1  94 HQCHVCGLEFEMGQALGGHMRRH 116
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.7E-114266IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6814269IPR007087Zinc finger, C2H2
SuperFamilySSF576677.2E-742116No hitNo description
SMARTSM003550.514264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139124.3E-1193119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68194121IPR007087Zinc finger, C2H2
SMARTSM003550.2494116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVSSMKQCRD QAEVPFVSLS LSLGAMADRI SKKQRRGADG EFVCKTCSRA FPSFQALGGH  60
RTSHLRGRHG LALGLAAGSD QPATKRTTDQ KQAHQCHVCG LEFEMGQALG GHMRRHREQE  120
APATTAQAPP VLLQLFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67028.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2535541e-145EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198422.17e-81zinc finger protein ZAT8-like
RefseqXP_020199617.17e-81zinc finger protein ZAT8-like
SwissprotQ9LX858e-19ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A287SRZ32e-94A0A287SRZ3_HORVV; Uncharacterized protein
STRINGMLOC_67028.11e-95(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-19C2H2 family protein