PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67050.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family E2F/DP
Protein Properties Length: 183aa    MW: 20890.7 Da    PI: 10.4304
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67050.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP40.25.6e-131383971
       E2F_TDP 39 vknkrRRiYDilNVLealnliek.....kekneirwkg 71
                  +++k+RR+YDi+NVL++lnliek     ++k+++rw g
  MLOC_67050.5  1 MRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 38
                  689********************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023197.1E-11138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-7238IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-12339IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRTKVRRLYD IANVLSSLNL IEKTQQVDSR KPAFRWLGQA KRKEGAAVTV ALPPNRKIMS  60
SKRAFGTDIT NIDNKRGKLV LETENKPKLM QAGSSMLKTF ESQLGQGKSS GFVYGPFHPA  120
GARKQEVDDQ TVRENETKNI QDWESLAVSF RPQYQNHALN DLFGHYVEAW RSWYLDLTRE  180
STS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67050.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753580.0AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187543.11e-128E2F transcription factor-like E2FE isoform X1
RefseqXP_020187544.11e-128E2F transcription factor-like E2FE isoform X2
TrEMBLA0A287W6S81e-134A0A287W6S8_HORVV; Uncharacterized protein
TrEMBLM0Y9K81e-134M0Y9K8_HORVV; Uncharacterized protein
STRINGMLOC_67050.11e-133(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.28e-40DP-E2F-like 1