PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6707.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 348aa    MW: 37456.6 Da    PI: 5.176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6707.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10146190655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  MLOC_6707.1 146 IVSERKRRFRMKEKLYELRALVPNI-----TKMDKASIIADAVAYVKNLQ 190
                  568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16137207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.34E-14137190No hitNo description
PROSITE profilePS5088815.535140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16142205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-8146190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEHHQRLLHL SPHQHQEHLM IGQGFFDVDP MHFHGEDGGF AVEPAAAGVD DGAWMEDLMH  60
LGDELFGGGG GGGGGVAGDE NDMVGAAAAD QAWRQECEGA SPDDNPCSYD DVISPVSGEQ  120
GPGCEPSRDD SDLSGTRKRR DRSKTIVSER KRRFRMKEKL YELRALVPNI TKMDKASIIA  180
DAVAYVKNLQ SHARKLKEDV ATLEARPGLA GRRQQQQQQQ KQGRRQGQHG RNGGDDEGNS  240
GSSRGGGGAR VTLVSAAQVG EGRFFVTVEC ERRDGVAAPL CAAVESLAGF LVESSNLGCS  300
SDRVVSTLTL KVSEATEEVM ISDRTVKLWV MAALLSEGFR PEATSEIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137152KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152884.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3B6C6D10.0A0A3B6C6D1_WHEAT; Uncharacterized protein
STRINGMLOC_6707.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-37FER-like regulator of iron uptake