PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67085.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 248aa MW: 27883.7 Da PI: 6.9566

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67085.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.5	3.5e-29	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++F+eav+ LGG+++AtPk+il+lm+ kg++++h+kSHLQ+YR+ MLOC_67085.2 18 PRVRWTEELHRQFIEAVDCLGGQDEATPKRILQLMGAKGVSISHIKSHLQMYRS 71 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.309	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-27	14	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.5E-16	16	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	18	71	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MRGFERRGVR QYNRSDEPRV RWTEELHRQF IEAVDCLGGQ DEATPKRILQ LMGAKGVSIS 60 HIKSHLQMYR SSCMNTNTTH RVRDHRTIDA SWNGYVNDIA AASDRIEASS YTTLPRGQRS 120 SPPNQIGEVF GSWAQSRGRL PWNSNMVITP SEKFSDSQAT GWPPHADRST RQKQQQAAAE 180 DCDLTLSIRH LEEEAMATSS EADGSSTTTE EATVPVRDRG AVDHRRSART NTVNLDLNLD 240 LDVSSSWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67085.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371605	0.0	AK371605.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138C08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187651.1	1e-101	two-component response regulator ARR11-like
TrEMBL	M0Y9Q8	0.0	M0Y9Q8_HORVV; Uncharacterized protein
STRING	MLOC_67085.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-25	G2-like family protein