PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67091.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 347aa    MW: 36881.6 Da    PI: 6.3091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67091.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.8e-13100151155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i+  A++++k+L+
  MLOC_67091.1 100 QRMTHIAVERNRRRQMNEYLVLLRSLMPES---YVQRGDQASIVGGAIDFVKELE 151
                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-1398155No hitNo description
PROSITE profilePS5088814.78699150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17100170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14100170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALVDALCAS SVENAALVYN TFNAAGFLLD NAAAGFYDGA GIASGPAHEL QAPDRAPGLS  60
AVGDVAASLE KQATSSPAPP RRKRRRRARS CKSREEAECQ RMTHIAVERN RRRQMNEYLV  120
LLRSLMPESY VQRGDQASIV GGAIDFVKEL EQQLQSLEAQ KRALARQQQH KAGCDATPLP  180
ARASTSGGNG GAACVESTSN CSSSVTEADG ASDAPPFAGF FTYPQYVWCQ SPRDATTLSA  240
DESRAGVADI EVNLVETHAS LRVMAPRRPG QLLRMVAGLQ ALRLTVLHLN VTALGSLVLY  300
SLSLKVEEGC DLTTADDIAA AVHHVLCFIH AEAEAEATAQ QLLAPAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RRKRRRR
28185RKRRR
38188RKRRRRAR
4100111RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575790.0AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189025.10.0transcription factor bHLH94-like
TrEMBLF2D1220.0F2D122_HORVV; Predicted protein
STRINGMLOC_67091.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-60bHLH family protein