PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67268.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 259aa    MW: 28456.2 Da    PI: 9.6446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67268.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29187245259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver++ d  ++++tYe++Hnh 
  MLOC_67268.2 187 SDNYSWRKYGQKPIKGSPHPRGYYRCSSIkDCPARKHVERCRGDAGMLIVTYENDHNHA 245
                   69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-13142184IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.4E-33175247IPR003657WRKY domain
PROSITE profilePS5081130.182181247IPR003657WRKY domain
SuperFamilySSF1182901.16E-26184247IPR003657WRKY domain
SMARTSM007743.1E-35186246IPR003657WRKY domain
PfamPF031065.2E-25188244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFFQTPLLDL SGCGVTPASI AAAQINGSRV SAAPAASHPP PPPPPPPPQI LFHHQIPQQQ  60
QQKKRPLEQQ RPASSDNKRF HFEQKPASEK PFHIEIPAAR SGKEPEVITF SFDNSVCTSS  120
AATSFFTNMS SQLITMSESS ACAPASRKAA HKADDDGKCH CPKKKKPREK RVVRMPAVSD  180
KVADIPSDNY SWRKYGQKPI KGSPHPRGYY RCSSIKDCPA RKHVERCRGD AGMLIVTYEN  240
DHNHAQPLDL ATLTANSEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-191842471274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67268.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700430.0AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156284.11e-144probable WRKY transcription factor 15
TrEMBLA0A287SMF20.0A0A287SMF2_HORVV; Uncharacterized protein
TrEMBLF2E1M20.0F2E1M2_HORVV; Predicted protein
STRINGMLOC_67268.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-42WRKY DNA-binding protein 7