PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67268.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 85aa    MW: 9500.66 Da    PI: 8.4794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67268.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-311371259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                  +D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver++ d  ++++tYe++Hnh 
  MLOC_67268.3 13 SDNYSWRKYGQKPIKGSPHPRGYYRCSSIkDCPARKHVERCRGDAGMLIVTYENDHNHA 71
                  69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-34573IPR003657WRKY domain
PROSITE profilePS5081130.182773IPR003657WRKY domain
SuperFamilySSF1182907.19E-281073IPR003657WRKY domain
SMARTSM007743.1E-351272IPR003657WRKY domain
PfamPF031064.0E-261470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MPAVSDKVAD IPSDNYSWRK YGQKPIKGSP HPRGYYRCSS IKDCPARKHV ERCRGDAGML  60
IVTYENDHNH AQPLDLATLT ANSEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22573774WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67268.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700431e-142AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156284.14e-56probable WRKY transcription factor 15
SwissprotQ9STX05e-39WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLB2KJ541e-57B2KJ54_HORVV; WRKY transcription factor 11 (Fragment)
STRINGMLOC_67268.26e-58(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-41WRKY DNA-binding protein 7