PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67296.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 237aa    MW: 25627 Da    PI: 10.5828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67296.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM965.8e-30191551128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk.atgkdkevls 94 
                   lppGfrF+Ptdeelvv+yL++k+ g +l++  vi++v ++++++Pwd+     a+e e y+F+ r  + a  +r  r  t+sg Wk a+ ++++v++
  MLOC_67296.1  19 LPPGFRFRPTDEELVVQYLRRKALGLPLPA-AVISDVhNLHSLDPWDIS---GAREGEKYYFAVRPAAGA--RRGGRtPTASGCWKpASARERPVVV 109
                   79****************************.89999999*********7...345678899999988765..466665688*****77778999999 PP

           NAM  95 k...kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                   +   +++lvg+kk+++f          ++  p   +t Wvmheyrl
  MLOC_67296.1 110 SrcgRNHLVGVKKSMAFVprrakgnkgSKAPPALAQTGWVMHEYRL 155
                   88888899**********886655532233444559********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3717182IPR003441NAC domain
PROSITE profilePS5100539.13119183IPR003441NAC domain
PfamPF023652.3E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MERTPVMVRQ GGQEVLRQLP PGFRFRPTDE ELVVQYLRRK ALGLPLPAAV ISDVHNLHSL  60
DPWDISGARE GEKYYFAVRP AAGARRGGRT PTASGCWKPA SARERPVVVS RCGRNHLVGV  120
KKSMAFVPRR AKGNKGSKAP PALAQTGWVM HEYRLALPHH HKNGCCLGEA GTEEWVVCRI  180
FQRHRSSSSS KGQTPGIHGT DGHRTMPPSP SSSASSSSSS CVTGGGSSSD LQEEVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-251918717169NO APICAL MERISTEM PROTEIN
1ut4_B1e-251918717169NO APICAL MERISTEM PROTEIN
1ut7_A1e-251918717169NO APICAL MERISTEM PROTEIN
1ut7_B1e-251918717169NO APICAL MERISTEM PROTEIN
3swm_A9e-261918720172NAC domain-containing protein 19
3swm_B9e-261918720172NAC domain-containing protein 19
3swm_C9e-261918720172NAC domain-containing protein 19
3swm_D9e-261918720172NAC domain-containing protein 19
3swp_A9e-261918720172NAC domain-containing protein 19
3swp_B9e-261918720172NAC domain-containing protein 19
3swp_C9e-261918720172NAC domain-containing protein 19
3swp_D9e-261918720172NAC domain-containing protein 19
4dul_A1e-251918717169NAC domain-containing protein 19
4dul_B1e-251918717169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151744.11e-140NAC domain-containing protein 83-like
TrEMBLG2ZH171e-173G2ZH17_HORVV; NAC transcription factor
STRINGMLOC_67296.11e-174(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-32NAC domain containing protein 83