PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67797.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 114aa    MW: 13124 Da    PI: 9.23
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67797.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.4e-092570655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +++E rRR +i ++  +L+el+P+      k  + +++L ++ +YIk+Lq
  MLOC_67797.1 25 SIAELRRRTEISKRVRNLQELVPNM----EKQTNTSDMLDLVADYIKELQ 70
                  789*********************6....4679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-111983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.7351969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-52374No hitNo description
PfamPF000103.0E-62570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-42575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-123285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MAEISNRIQE LVPKVKKDRS SHRRSIAELR RRTEISKRVR NLQELVPNME KQTNTSDMLD  60
LVADYIKELQ MKIKVRKEEE ASCTCLPSKQ NYSPADEAQQ PTLDEASAVP RTPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3557751e-67AK355775.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1025K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238294.13e-27transcription factor bHLH130 isoform X1
SwissprotQ66GR35e-23BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A287IFE81e-60A0A287IFE8_HORVV; Uncharacterized protein
STRINGMLOC_67797.15e-77(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-25bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]