PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67874.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 102aa    MW: 11096.8 Da    PI: 8.4927
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67874.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-0967102239
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                      g +T eEd +++ +  qlG++ W++Ia+ +  +Rt+++
     MLOC_67874.2  67 GGFTDEEDAIIYSLYSQLGSK-WSLIASQLE-RRTDND 102
                      569******************.*********.****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.82E-1746101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-124672IPR009057Homeodomain-like
PROSITE profilePS500904.0774760IPR017877Myb-like domain
PROSITE profilePS5129416.7561102IPR017930Myb domain
PfamPF002491.7E-767102IPR001005SANT/Myb domain
CDDcd001674.42E-669102No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1173102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MATPAAGSPS PPKPVSSLAR SLPLPCPAVP LVVLDVSPSC VCVGLKRCGK SCRLRWLNYL  60
RPDIRHGGFT DEEDAIIYSL YSQLGSKWSL IASQLERRTD ND
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67874.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764097e-94AK376409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171470.12e-36transcription factor RAX2-like
SwissprotQ9FKL21e-28MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A287KC431e-67A0A287KC43_HORVV; Uncharacterized protein
STRINGMLOC_67874.12e-36(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.13e-30myb domain protein 87
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]