PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67937.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 135aa    MW: 14502.2 Da    PI: 11.8102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67937.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000522183955
                  TCHHHHHHHHHHHHHHH CS
           HLH 39 sKaeiLekAveYIksLq 55
                  +Ka+iL  Av+Y+++Lq
  MLOC_67937.2  2 DKATILGDAVKYVRELQ 18
                  8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-5134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-7129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDKATILGDA VKYVRELQEK VKTMEDDESA AAAATTTTTI RSAVLVSKKV KAAARRRGRG  60
GGRRRGVEPR RAAGDRGAGV RREDRAGADP LQEREGAAGE GAGGGGGAPA RHHPHQRHAL  120
PGRHRHHHHH RKEGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67937.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536590.0AK353659.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001O03.
GenBankAK3643450.0AK364345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2024A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGMLOC_67937.13e-85(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.12e-07ABA-inducible BHLH-type transcription factor