PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67958.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 174aa    MW: 19854.6 Da    PI: 11.2761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67958.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.7e-13133174143
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      r +W++eE + l + ++++G ++W t+a+ ++ gR++ qc+ r
     MLOC_67958.1 133 RVKWSEEENKMLTQMINKHGLKNWQTVAHAIP-GRSAPQCRQR 174
                      789*****************************.********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.165128174IPR017930Myb domain
SuperFamilySSF466896.24E-12130174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-12131174IPR009057Homeodomain-like
SMARTSM007173.7E-5132174IPR001005SANT/Myb domain
PfamPF002491.6E-11133174IPR001005SANT/Myb domain
CDDcd001673.05E-12135174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MHVFLPIPST SSPRARRQRQ RASHSHPTHL FLLGPLLRIL HRGELRSFNR CFWRTWVFFP  60
AMSRIGDSMP RERSVNSTSH SRKADANVSG TPHDTAKHCH GEELGNIGGQ LCKNDGHSFK  120
ESCSITNSEV LTRVKWSEEE NKMLTQMINK HGLKNWQTVA HAIPGRSAPQ CRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3112270.0KC311227.1 Hordeum vulgare R2R3-type Myb transcription factor (Myb6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172077.12e-71transcriptional activator Myb-like
RefseqXP_020172078.12e-71transcriptional activator Myb-like
RefseqXP_020172079.12e-71transcriptional activator Myb-like
RefseqXP_020172080.12e-71transcriptional activator Myb-like
RefseqXP_020172082.12e-71transcriptional activator Myb-like
TrEMBLA0A287U2A41e-125A0A287U2A4_HORVV; Uncharacterized protein
STRINGMLOC_67958.11e-127(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-09myb domain protein 3r-4