PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67958.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 174aa    MW: 19069.5 Da    PI: 10.3248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67958.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09141174135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      r +W++eE + l + ++++G ++W t+a+ ++ gR
     MLOC_67958.2 141 RVKWSEEENKMLTQMINKHGLKNWQTVAHAIP-GR 174
                      789*****************************.98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.553136174IPR017930Myb domain
SuperFamilySSF466891.15E-7139174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-9141174IPR009057Homeodomain-like
PfamPF002491.7E-7141174IPR001005SANT/Myb domain
CDDcd001672.17E-8143174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSFFRSRPPL LLVLVASDSV RPTPTRRISS CSVLSSGSSI AGSSAGQNPN PAATAFNRCF  60
WRTWVFFPAM SRIGDSMPRE RSVNSTSHSR KADANVSGTP HDTAKHCHGE ELGNIGGQLC  120
KNDGHSFKES CSITNSEVLT RVKWSEEENK MLTQMINKHG LKNWQTVAHA IPGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67958.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3112270.0KC311227.1 Hordeum vulgare R2R3-type Myb transcription factor (Myb6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172077.12e-65transcriptional activator Myb-like
RefseqXP_020172078.12e-65transcriptional activator Myb-like
RefseqXP_020172079.12e-65transcriptional activator Myb-like
RefseqXP_020172080.12e-65transcriptional activator Myb-like
RefseqXP_020172082.12e-65transcriptional activator Myb-like
TrEMBLA0A287U2C41e-123A0A287U2C4_HORVV; Uncharacterized protein
STRINGMLOC_67958.12e-85(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-07myb domain protein 98