PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67996.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 242aa    MW: 25804.6 Da    PI: 4.8918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67996.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23e-21104153255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a++ a+++++g
  MLOC_67996.1 104 VYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDLAALEFRG 153
                   69*******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-23104162IPR016177DNA-binding domain
SMARTSM003801.5E-38104167IPR001471AP2/ERF domain
PROSITE profilePS5103225.554104161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32104162IPR001471AP2/ERF domain
PfamPF008475.4E-15104153IPR001471AP2/ERF domain
CDDcd000181.32E-30105161No hitNo description
PRINTSPR003671.5E-11105116IPR001471AP2/ERF domain
PRINTSPR003671.5E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAAADQDCAA TFHGRRGGDD TAAAELHGRM MSTEQEHGII VAALRHVVSG YTTAPPEVVV  60
AVACGRCGID GCLGCDFFGA TEADAVTVGA SGAGQRKRRR KKNVYRGVRQ RPWGKWAAEI  120
RDPRRAVRKW LGTFDTAEEA ARAYDLAALE FRGPRARLNF PCSDEPLPEH GSDNGGGDAG  180
AAPENETLTT PSPCSMDAGQ RTPGEWQLGA DDRAGDQLWE GLQDLMTIDG EDPCFAPFSS  240
PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20105162664ATERF1
3gcc_A5e-20105162664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599RKRRR
295101RKRRRKK
395102RKRRRKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674800.0AK367480.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177674.11e-129ethylene-responsive transcription factor ERF109-like
TrEMBLA0A287RMP61e-176A0A287RMP6_HORVV; Uncharacterized protein
STRINGMLOC_67996.11e-176(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-28redox responsive transcription factor 1