PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68061.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 114aa    MW: 12378.8 Da    PI: 9.0228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68061.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.34.9e-262280258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58
                   Dg++WrKYGqK+++gs++pr YYrC+++  gC ++++v+r++e+p +++i Y geH++
  MLOC_68061.2 22 ADGFAWRKYGQKDINGSNHPRLYYRCAFRgeGCAATRRVQRAQEEPAAFVIAYYGEHTC 80
                  6***************************9999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-261281IPR003657WRKY domain
PROSITE profilePS5081121.541683IPR003657WRKY domain
SuperFamilySSF1182905.49E-241781IPR003657WRKY domain
SMARTSM007743.5E-322182IPR003657WRKY domain
PfamPF031067.1E-252380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MPCKRRVRGA EAHREVHAGT TADGFAWRKY GQKDINGSNH PRLYYRCAFR GEGCAATRRV  60
QRAQEEPAAF VIAYYGEHTC GAAVCRQSAE PLPPSVVDSG SNARGIVGAT AIDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1723801068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68061.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-74HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186011.12e-65probable WRKY transcription factor 38
TrEMBLA0A287LWL33e-77A0A287LWL3_HORVV; Uncharacterized protein
STRINGEMT251639e-65(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.18e-20WRKY DNA-binding protein 30