PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68213.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 666aa    MW: 69900.2 Da    PI: 6.3035
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68213.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093664031954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  MLOC_68213.2 366 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 403
                   664459******************************88 PP
2BELL113.41.2e-36222293172
          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   erqelq+kk kL+++l+eV++rY+qy++q+  v ssFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  MLOC_68213.2 222 ERQELQMKKGKLVNMLDEVEQRYRQYHQQMASVSSSFEAVAGAGSARTYTALALRTISRQFRCLRDAIASQV 293
                   79********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-53146291IPR006563POX domain
PfamPF075263.0E-49151290IPR006563POX domain
PROSITE profilePS5007112.228344407IPR001356Homeobox domain
SMARTSM003891.2E-9347411IPR001356Homeobox domain
CDDcd000863.62E-13347408No hitNo description
SuperFamilySSF466893.59E-17348414IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-29350413IPR009057Homeodomain-like
PfamPF059202.6E-18364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAAYYHGGTG TDIHQAGSDG LQTLYLMNPS YGTGGYGDAA PSGANMMLLN SSVSSMTPAS  60
FGGHQASPPP PPGQHFVGIP LQAPPSGYNL WTPTTTGIAD VMSPPTQQAH GVSAVLSLSS  120
RETPPVTVAS IAGDEGRYQL GATTAASQGQ VVMNSKYLRA AQELLDEVVS VSKGVDDVDA  180
KAKSSALVKK KEDSEGLSGG GGEDGASGAK EGAPAPEMST AERQELQMKK GKLVNMLDEV  240
EQRYRQYHQQ MASVSSSFEA VAGAGSARTY TALALRTISR QFRCLRDAIA SQVRAASRAL  300
GEDCDADGLG GGLGGGRGVG SRLRYIDHQL RQQRALQQLG MMQSSAWRPQ RGLPERSVSI  360
LRAWLFEHFL HPYPKDSDKI MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEETKEH  420
QQQQDGGDDK DRPSGSGPAG GKSSSHADGV DDGTPRSMSM SRAVAGAGTS EGGGAVQASM  480
LGLAGDHQAH AGFYHDEDED GGLRRGFKKA RADDLEHQPP AAFDFGALHH AQAAAAAAAA  540
AARQQHDEVS HRELLMKFME SGGTAGARDH HQHQQDDDGA GGGYSLFAPG PYGQFGTDQS  600
FAFAGQHGGV SLTLGLPHGT GDQTAFLMGG GSSNGADSGG SGAAGYDMNM QTTKSFAAQL  660
MRDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17353411159Homeobox protein Meis2
5bng_B2e-17353411159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68213.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546390.0AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02.
GenBankAK3550780.0AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22.
GenBankAK3665360.0AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18.
GenBankAK3743450.0AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178285.10.0BEL1-like homeodomain protein 1
RefseqXP_020178286.10.0BEL1-like homeodomain protein 1
TrEMBLF2CSN70.0F2CSN7_HORVV; Predicted protein
STRINGMLOC_68213.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.38e-83BEL1-like homeodomain 1