PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68290.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 314aa    MW: 32525.6 Da    PI: 5.0688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68290.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-19154203255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ ae Aa+a++aa++ ++g
  MLOC_68290.2 154 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDDAEAAARAYDAAALGFRG 203
                   8********.**********7.....337**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-18153213No hitNo description
PfamPF008478.2E-12154203IPR001471AP2/ERF domain
PROSITE profilePS5103224.987154211IPR001471AP2/ERF domain
SMARTSM003801.4E-34154217IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22154213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-32154213IPR001471AP2/ERF domain
PRINTSPR003676.1E-11155166IPR001471AP2/ERF domain
PRINTSPR003676.1E-11177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MCCGAEVADP GEHRRRLAAG DDDGGDGREE HALSPPTANT TTMWRRRQAQ EMSAMVSALA  60
QVVAGGRGGG NEGGMAMASS AKRPAEHEAF TEEAWWSTSY GDGDGDGGAR SASSFLAATP  120
AASYSAYGAA AGDEELPSPS SAESGGGGGT PRKRYRGVRQ RPWGKWAAEI RDPHKAARVW  180
LGTFDDAEAA ARAYDAAALG FRGSRAKLNF PESATIPPQQ QPPPAPASAM PPPQRPEALL  240
ESQAYSHSHY ARFLVPSTGE PSLLPAGSTP RTPLIYSFGA GASYPLEPES RGEGTAGTEC  300
PAGPDGDLSS GVQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21153211463ATERF1
3gcc_A5e-21153211463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68290.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620610.0AK362061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238677.21e-66ethylene-responsive transcription factor ABR1
TrEMBLF2DDU40.0F2DDU4_HORVV; Predicted protein
STRINGMLOC_68290.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-25ethylene response factor 110