PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68293.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 217aa    MW: 22838.8 Da    PI: 9.0281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68293.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07111131425
                   ---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                   ++C+ff++ G C yG++C++ H
  MLOC_68293.3 111 RPCKFFLA-GDCTYGEKCRYPH 131
                   79******.**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0542853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6108132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023109133IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4111131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4111131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.2E-12136206IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.9E-7138177IPR001680WD40 repeat
SuperFamilySSF509783.85E-11140205IPR017986WD40-repeat-containing domain
PfamPF004001.8E-6141177IPR001680WD40 repeat
PROSITE profilePS5008214.318145186IPR001680WD40 repeat
PROSITE profilePS5029413.158145186IPR017986WD40-repeat-containing domain
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGGY NKWGRGPGGA DGGVRHKVPD RPCKFFLAGD  120
CTYGEKCRYP HTYCMSNSIT LLTPLQGHEK VVTGIALPAG SDKLYSGSKD GTVRLWDCQT  180
GQCAGVLPVG GEVGCMISEG PWVFVGIPDA VKVGNGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68293.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594520.0AK359452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1097E17.
GenBankAK3627330.0AK362733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162465.11e-128zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-112C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLF2D6E01e-156F2D6E0_HORVV; Predicted protein
TrEMBLF2DFR61e-156F2DFR6_HORVV; Predicted protein
STRINGMLOC_68293.11e-157(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.16e-61zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]