PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68369.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 337aa    MW: 36446.2 Da    PI: 7.1662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68369.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.71.7e-21134198359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 
                   Dgy+WrKYGqK+++ + +prsYYrCt +   gCp+k+ v+r+++d++       +++Y +eH ++
  MLOC_68369.1 134 DGYQWRKYGQKQIEAAMHPRSYYRCTNStnqGCPAKRTVQRNDDDGNdngrpKYTVVYISEHSCK 198
                   9************************9888889***********9987444445789999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-23122199IPR003657WRKY domain
SuperFamilySSF1182907.06E-21125199IPR003657WRKY domain
SMARTSM007744.9E-28132199IPR003657WRKY domain
PROSITE profilePS5081119.233134178IPR003657WRKY domain
PfamPF031061.1E-22134198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQRSRGCAPG GEHGWAAADG GGMQLQRRER ELVAQLHELL YPSTSPSRSG ASSCSGLAAE  60
LYWEHGSSQV KATASCGGGK RRGGRKRARE DERHEEGQGQ RAGAATATKA TTRCRRKKLG  120
TTTRTLVTTV PDFDGYQWRK YGQKQIEAAM HPRSYYRCTN STNQGCPAKR TVQRNDDDGN  180
DNGRPKYTVV YISEHSCKST ESAAVPVILE TTVRADTAAA PDVDVVPGSS SSAISSETQS  240
PASSSDLTWS SGGSEDGANP PPRARDDYSR LFAIEDECWW WNPSPAPAVA PALLQEMDFD  300
GPIRSPVHVA AADGSWINDL FVNEPPFVLN SCHLFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-151341981069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6696621e-179EU669662.1 Triticum aestivum WRKY32 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196414.10.0WRKY transcription factor 22-like
TrEMBLA0A287R1T50.0A0A287R1T5_HORVV; Uncharacterized protein
STRINGMLOC_68369.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.25e-13WRKY DNA-binding protein 67