PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68409.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 216aa    MW: 24905.3 Da    PI: 8.2908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68409.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.3e-11121205497
                   E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++++ ++g l +p +f e +   + ++ t++l d++  ++e+++    k g+  + +GW+ F   ++L +gD +vF+l++r++f  +v ++
  MLOC_68409.2 121 PI-SNYSDARGPLGIPLQFREMYL--PWCDETISLIDQEDVEFEMTY--LAKHGA--ICSGWSLFSIGHKLADGDCLVFQLVQRTKF--KVYII 205
                   44.678888999*******98885..57999****************..677666..679**********************99998..67665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-13112208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-16113208IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-13116205No hitNo description
PROSITE profilePS508638.783117208IPR003340B3 DNA binding domain
SMARTSM010191.1E-5118208IPR003340B3 DNA binding domain
PfamPF023622.7E-7123205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAEPNSYEEQ RRRQVEENKR KLDELRLHRL STAVREAAVK PVPTEEPKLR YLRPPPPPTR  60
RSGRVAGLPK QPDYRYSVDN TRRELPPAPV YATNEASTYA FTKAKELKNQ LCSDQPSFIK  120
PISNYSDARG PLGIPLQFRE MYLPWCDETI SLIDQEDVEF EMTYLAKHGA ICSGWSLFSI  180
GHKLADGDCL VFQLVQRTKF KVYIIGASSY YEQDHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68409.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743461e-44AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175454.11e-107B3 domain-containing protein Os06g0194400-like
RefseqXP_020175455.11e-107B3 domain-containing protein Os06g0194400-like
SwissprotQ69V367e-71Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A3B6C2681e-102A0A3B6C268_WHEAT; Uncharacterized protein
TrEMBLA0A446M1B01e-102A0A446M1B0_TRITD; Uncharacterized protein
STRINGMLOC_68409.21e-161(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-32B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]