PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_68487.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

SRS

Protein Properties

Length: 80aa MW: 8447.42 Da PI: 6.227

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_68487.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	84.2	3.3e-26	4	57	101	154
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++P+evsseavfrcvr++ vd++e+elaYqt+vsigGhvfkGiL+d G+++ MLOC_68487.2 4 VAERFPREVSSEAVFRCVRLGPVDQAEAELAYQTTVSIGGHVFKGILHDVGPSS 57 5688***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.2E-23	5	56	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.0E-24	7	55	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MVTVAERFPR EVSSEAVFRC VRLGPVDQAE AELAYQTTVS IGGHVFKGIL HDVGPSSNAH 60 AQLQAAAGGS GSDYQFRLTG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_68487.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241285	5e-63	AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.
GenBank	AP005314	5e-63	AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01.
GenBank	AP005567	5e-63	AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07.
GenBank	AP014965	5e-63	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	5e-63	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192267.1	4e-39	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9FXH7	1e-17	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A1I9RHF0	2e-48	A0A1I9RHF0_HORVU; SHI
TrEMBL	A0A1I9RHF6	2e-48	A0A1I9RHF6_HORVU; SHI
TrEMBL	A0A1I9RHG0	2e-48	A0A1I9RHG0_HORVU; SHI
TrEMBL	A0A1I9RHG5	2e-48	A0A1I9RHG5_HORVU; SHI
TrEMBL	A0A1I9RHG8	2e-48	A0A1I9RHG8_HORVU; SHI
TrEMBL	A0A287S092	2e-48	A0A287S092_HORVV; Uncharacterized protein
TrEMBL	A0A287S098	6e-50	A0A287S098_HORVV; Uncharacterized protein
STRING	MLOC_68487.1	3e-50	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-19	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]