PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68511.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 243aa    MW: 26516.7 Da    PI: 5.6923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68511.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.67e-092282148
                     TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48
                       +W++Ia++++  Rt++++k++w+++l
     MLOC_68511.2  2 ECRWAAIASYLP-QRTDNDIKNYWNTHL 28
                     568*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001677.19E-7127No hitNo description
PROSITE profilePS5129416.663132IPR017930Myb domain
PfamPF002492.7E-7228IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-8335IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-13335IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
GECRWAAIAS YLPQRTDNDI KNYWNTHLKK KLKKQQALGA IFAPPPPPSS SAETAANLPA  60
AVHLDHHHHR YHHDAIAASS STVDHGCYAA CSNPEVTQQH TTITMRRSPF ADVATDCSSS  120
SYASSMDNIS RLLDGFMKSS PPTATDVKPN IAVFSDPFMS FDRMTGAGAG LAFVPGVQQQ  180
QQQMPVLMGG MIYDDEATGQ QQQLQHQLPL CSIEKWLLDE AAEQVADLME LSDGDCSSLP  240
LLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68511.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574780.0AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172742.11e-127myb-related protein 306-like
TrEMBLA0A287R1411e-177A0A287R141_HORVV; Uncharacterized protein
STRINGMLOC_68511.11e-178(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.27e-12myb domain protein 60