PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68598.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 370aa    MW: 40272.9 Da    PI: 7.6414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68598.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10328354430
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
           HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                    hn+ ErrRRdriN+++  L+el+P++
  MLOC_68598.1 328 VHNMSERRRRDRINEKMRALQELIPNC 354
                   5************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-10322361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10322361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.062324370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-7327356No hitNo description
PfamPF000101.2E-7328354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSEPGNELEE LLWDNGPALR RAASPFPPFS CSAAGTAKPQ ELAKHPAMAQ GHDDDAVPWL  60
QHYPIIGVDD DGGGADTTPI PQEYFSTLFP VFSDLTAAVA SRDAGAPSTS HAAVAVEPLP  120
EPPAPPKQQQ QQPPPRSTGE GVMNFSFFSR PLQRSLPQAS LRTSAAGSKS VESTLLQTNS  180
NRLRSTPLFS EQRTAWLQPP KESPAPRPPA PPVPVRHAAE PAAALPQRLQ PEARAAALPQ  240
RLQPEARAAV LPQRLQSEAR ASEMPPPPAT ATTSSVCSDN GERSQLKRSS HQTLEWSVSQ  300
DDEDLDDEAG GLRRSAARST KRGRTAEVHN MSERRRRDRI NEKMRALQEL IPNCNKVYDT  360
LTFARKLRNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597000.0AK359700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164967.10.0transcription factor APG-like
SwissprotQ6AT905e-56APG_ORYSJ; Transcription factor APG
TrEMBLM0YEX70.0M0YEX7_HORVV; Uncharacterized protein
STRINGMLOC_68598.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-16phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]